PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003922.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 795aa    MW: 90648.9 Da    PI: 8.6715
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003922.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.33.8e-2149149190
                     FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdg 74 
                              +fY eYA+ vGF+vr s+ kk  r+g +  + +vCs+eg+++ +  k             + ++r+r+++r+gCka+++ kk ++g
  Itr_sc003922.1_g00005.1  49 EFYIEYATLVGFDVRHSTVKKD-RDGGVNLQYLVCSREGFKSVSGGKanivhgdlqdsgLVAQKRRRVSNRVGCKARVVFKKLNNG 133
                              6*****************9998.555599999**********9999999********99999999********************* PP

                     FAR1  75 kwevtkleleHnHela 90 
                              ++ v+++e+ HnH+l+
  Itr_sc003922.1_g00005.1 134 RYWVSSFEERHNHSLC 149
                              **************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.9E-1849149IPR004330FAR1 DNA binding domain
PfamPF105513.0E-32270362IPR018289MULE transposase domain
PROSITE profilePS509669.458596632IPR007527Zinc finger, SWIM-type
PfamPF044342.7E-4605624IPR007527Zinc finger, SWIM-type
SMARTSM005757.8E-4607634IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
DCGGNSDKEG EVSRIEISPG STKYWWPICD DGMKPIIGQC FETLVGGVEF YIEYATLVGF  60
DVRHSTVKKD RDGGVNLQYL VCSREGFKSV SGGKANIVHG DLQDSGLVAQ KRRRVSNRVG  120
CKARVVFKKL NNGRYWVSSF EERHNHSLCA AMFRKYMKVN RKLDFGHQAF MSNCTKANIG  180
TSQCFRLYTE FVGGTDNVGA TDVDFQNMKR DLRAYIRGCD AQLALASLVG KQDRCAAFYY  240
KHDINENDQL CRVFWADPVS RRNWTVFGDV VSFDATYSTN RYRMVFVPFT GVDNHKRCIT  300
FGAALITKED TDSYVWVLES FKDAMGTAPS CFVTDQDPAM KSALEQVYPG SRHRFCMWHI  360
MTKVSEKVGP VLSNDEVFRR KLNSIVWDEK QQPDVFESRW EALLREYGLL EQKWFAQLWE  420
AREFWIPAYF KDMPLSSXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  480
XXXXXXXXXX XGQNSFFGRY LSKNASLVEF FSHFQSAMDA QRNTQSRLNA GCEGHYAPLK  540
TPLHLERHAS TVYTIKIFHE VQSEIYACCF YCSVVSIQPS GEVINYCIKD SDEQQFNVCY  600
NSIDTTATCT CLLFQRIGWL CRHIFLVFKD ARIDNIPSRY IVDRWTRRVC LRQEFELNGV  660
TVDLNATNGA TKTMENKMWS EIFACVGLAI TNPDRVEQLT RVVQQQKETF IGESKGSDGL  720
QGKNPMIQSF CGTIPSSAIL VKPPPMAKNK GSGKRIKGKR EKAIEQVKKG GRKCNGCGKR  780
EGHNSRSCLV LKGLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110114KRRRV
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-62FAR1-related sequence 5